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IPython Interactive Computing and Visualization Cookbook

You're reading from   IPython Interactive Computing and Visualization Cookbook Harness IPython for powerful scientific computing and Python data visualization with this collection of more than 100 practical data science recipes

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Product type Paperback
Published in Sep 2014
Publisher
ISBN-13 9781783284818
Length 512 pages
Edition 1st Edition
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Author (1):
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Cyrille Rossant Cyrille Rossant
Author Profile Icon Cyrille Rossant
Cyrille Rossant
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Table of Contents (17) Chapters Close

Preface 1. A Tour of Interactive Computing with IPython FREE CHAPTER 2. Best Practices in Interactive Computing 3. Mastering the Notebook 4. Profiling and Optimization 5. High-performance Computing 6. Advanced Visualization 7. Statistical Data Analysis 8. Machine Learning 9. Numerical Optimization 10. Signal Processing 11. Image and Audio Processing 12. Deterministic Dynamical Systems 13. Stochastic Dynamical Systems 14. Graphs, Geometry, and Geographic Information Systems 15. Symbolic and Numerical Mathematics Index

Profiling your code line-by-line with line_profiler


Python's native cProfile module and the corresponding %prun magic break down the execution time of code function by function. Sometimes, we may need an even more fine-grained analysis of code performance with a line-by-line report. Such reports can be easier to read than the reports of cProfile.

To profile code line-by-line, we need an external Python module named line_profiler created by Robert Kern, available at http://pythonhosted.org/line_profiler/. In this recipe, we will demonstrate how to use this module within IPython.

Getting ready

To install line_profiler, type pip install line_profiler in a terminal, or type !pip install line_profiler in IPython (you need a C compiler).

On Windows, you can use Chris Gohlke's unofficial package available at www.lfd.uci.edu/~gohlke/pythonlibs/#line_profiler.

How do to it...

We will profile the same simulation code as in the previous recipe, line-by-line:

  1. First, let's import NumPy and the line_profiler...

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