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Bayesian Analysis with Python

You're reading from   Bayesian Analysis with Python A practical guide to probabilistic modeling

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Product type Paperback
Published in Jan 2024
Publisher Packt
ISBN-13 9781805127161
Length 394 pages
Edition 3rd Edition
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Author (1):
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Osvaldo Martin Osvaldo Martin
Author Profile Icon Osvaldo Martin
Osvaldo Martin
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Table of Contents (15) Chapters Close

Preface
1. Chapter 1 Thinking Probabilistically FREE CHAPTER 2. Chapter 2 Programming Probabilistically 3. Chapter 3 Hierarchical Models 4. Chapter 4 Modeling with Lines 5. Chapter 5 Comparing Models 6. Chapter 6 Modeling with Bambi 7. Chapter 7 Mixture Models 8. Chapter 8 Gaussian Processes 9. Chapter 9 Bayesian Additive Regression Trees 10. Chapter 10 Inference Engines 11. Chapter 11 Where to Go Next 12. Bibliography
13. Other Books You May Enjoy
14. Index

9.5 Choosing the number of trees

The number of trees (m) controls the flexibility of the BART function. As a rule of thumb, the default value of 50 should be enough to get a good approximation. And larger values, like 100 or 200, should provide a more refined answer. Usually, it is hard to overfit by increasing the number of trees, because the larger the number of trees, the smaller the values at the leaf nodes.

In practice, you may be worried about overshooting m because the computational cost of BART, both in terms of time and memory, will increase. One way to tune m is to perform K-fold cross-validation, as recommended by Chipman et al. [2010]. Another option is to approximate cross-validation by using LOO as discussed in Chapter 5. We have observed that LOO can indeed be of help to provide a reasonable value of m [Quiroga et al.2022].

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