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Deep Learning for Genomics

You're reading from   Deep Learning for Genomics Data-driven approaches for genomics applications in life sciences and biotechnology

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Product type Paperback
Published in Nov 2022
Publisher Packt
ISBN-13 9781804615447
Length 270 pages
Edition 1st Edition
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Author (1):
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Upendra Kumar Devisetty Upendra Kumar Devisetty
Author Profile Icon Upendra Kumar Devisetty
Upendra Kumar Devisetty
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Table of Contents (18) Chapters Close

Preface 1. Part 1 – Machine Learning in Genomics
2. Chapter 1: Introducing Machine Learning for Genomics FREE CHAPTER 3. Chapter 2: Genomics Data Analysis 4. Chapter 3: Machine Learning Methods for Genomic Applications 5. Part 2 – Deep Learning for Genomic Applications
6. Chapter 4: Deep Learning for Genomics 7. Chapter 5: Introducing Convolutional Neural Networks for Genomics 8. Chapter 6: Recurrent Neural Networks in Genomics 9. Chapter 7: Unsupervised Deep Learning with Autoencoders 10. Chapter 8: GANs for Improving Models in Genomics 11. Part 3 – Operationalizing models
12. Chapter 9: Building and Tuning Deep Learning Models 13. Chapter 10: Model Interpretability in Genomics 14. Chapter 11: Model Deployment and Monitoring 15. Chapter 12: Challenges, Pitfalls, and Best Practices for Deep Learning in Genomics 16. Index 17. Other Books You May Enjoy

What are autoencoders?

Autoencoders are a type of deep NN (DNN) that can learn an efficient reduced representation of the data in an unsupervised way and minimize the error between the compressed and subsequently reconstructed data compared to the original data. Why compress the data and then reconstruct the original data? Isn’t it counterintuitive? Suppose you are on your vacation and took pictures, but you realized after you return from vacation that a picture has noise because of dim light. Wouldn't it be nice if there was a way to remove the background and make the picture great? This is, in computer vision lingo, called feature variation, which removes any noise in a picture. This is what autoencoders do. They learn a representation or latent space from the training data to ignore signal noise. The compression step forces the network to only learn the most important latent features. This is because if the model is at full capacity, it will just copy the data without...

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