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R Bioinformatics Cookbook

You're reading from   R Bioinformatics Cookbook Use R and Bioconductor to perform RNAseq, genomics, data visualization, and bioinformatic analysis

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Product type Paperback
Published in Oct 2019
Publisher Packt
ISBN-13 9781789950694
Length 316 pages
Edition 1st Edition
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Authors (2):
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Dr Dan Maclean Dr Dan Maclean
Author Profile Icon Dr Dan Maclean
Dr Dan Maclean
Dan MacLean Dan MacLean
Author Profile Icon Dan MacLean
Dan MacLean
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Toc

Table of Contents (13) Chapters Close

Preface 1. Performing Quantitative RNAseq 2. Finding Genetic Variants with HTS Data FREE CHAPTER 3. Searching Genes and Proteins for Domains and Motifs 4. Phylogenetic Analysis and Visualization 5. Metagenomics 6. Proteomics from Spectrum to Annotation 7. Producing Publication and Web-Ready Visualizations 8. Working with Databases and Remote Data Sources 9. Useful Statistical and Machine Learning Methods 10. Programming with Tidyverse and Bioconductor 11. Building Objects and Packages for Code Reuse 12. Other Books You May Enjoy

Creating interactive web graphics with plotly

Exploring a dataset interactively through a graphical user interface can be a rewarding and enlightening way to analyze and interrogate data. Dynamically adding and removing data from a plot, zooming in and out of specific parts, or allowing the plot to change with time-dependent on underlying data can allow us to see trends and features we could not see with static plots. In this recipe, we'll look at using the plotly library to create interactive graphics in R, building up from a basic plot to a more involved one.

Getting ready

In this recipe, we'll use the built-in Orange data, which describes changes in the circumference of orange trees' trunks over time. This...

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