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R Bioinformatics Cookbook

You're reading from   R Bioinformatics Cookbook Utilize R packages for bioinformatics, genomics, data science, and machine learning

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Product type Paperback
Published in Oct 2023
Publisher Packt
ISBN-13 9781837634279
Length 396 pages
Edition 2nd Edition
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Author (1):
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Dan MacLean Dan MacLean
Author Profile Icon Dan MacLean
Dan MacLean
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Toc

Table of Contents (16) Chapters Close

Preface 1. Chapter 1: Setting Up Your R Bioinformatics Working Environment 2. Chapter 2: Loading, Tidying, and Cleaning Data in the tidyverse FREE CHAPTER 3. Chapter 3: ggplot2 and Extensions for Publication Quality Plots 4. Chapter 4: Using Quarto to Make Data-Rich Reports, Presentations, and Websites 5. Chapter 5: Easily Performing Statistical Tests Using Linear Models 6. Chapter 6: Performing Quantitative RNA-seq 7. Chapter 7: Finding Genetic Variants with HTS Data 8. Chapter 8: Searching Gene and Protein Sequences for Domains and Motifs 9. Chapter 9: Phylogenetic Analysis and Visualization 10. Chapter 10: Analyzing Gene Annotations 11. Chapter 11: Machine Learning with mlr3 12. Chapter 12: Functional Programming with purrr and base R 13. Chapter 13: Turbo-Charging Development in R with ChatGPT 14. Index 15. Other Books You May Enjoy

Creating different document formats from the same source

The Quarto system is based on the versatile and powerful Pandoc tool for converting documents between different formats. One of its most useful features is the ability to translate between various markup languages, such as HTML and LaTeX, and Markdown and Microsoft Office formats, making it a valuable tool for writers, researchers, and developers alike. This means that if you have a document written in one format, you can easily convert it to another format without having to manually reformat the entire document. Pandoc can also perform various transformations, such as adding footnotes, tables, and images, making it a great tool for formatting and preparing documents for publication. For example, if you need to prepare a report for submission to a journal, you can use Pandoc to convert your R Markdown document to PDF or Word, add images and tables, and format it according to the journal’s specifications. Formats are specified...

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