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R Deep Learning Cookbook

You're reading from  R Deep Learning Cookbook

Product type Book
Published in Aug 2017
Publisher Packt
ISBN-13 9781787121089
Pages 288 pages
Edition 1st Edition
Languages
Authors (2):
PKS Prakash PKS Prakash
Profile icon PKS Prakash
Achyutuni Sri Krishna Rao Achyutuni Sri Krishna Rao
Profile icon Achyutuni Sri Krishna Rao
View More author details
Toc

Table of Contents (17) Chapters close

Title Page
Credits
About the Authors
About the Reviewer
www.PacktPub.com
Customer Feedback
Preface
1. Getting Started 2. Deep Learning with R 3. Convolution Neural Network 4. Data Representation Using Autoencoders 5. Generative Models in Deep Learning 6. Recurrent Neural Networks 7. Reinforcement Learning 8. Application of Deep Learning in Text Mining 9. Application of Deep Learning to Signal processing 10. Transfer Learning

Installing all three packages at once using Docker


Docker is a software-contained platform that is used to host multiple software or apps side by side in isolated containers to get better computing density. Unlike virtual machines, containers are built only using libraries and the settings required by any software but do not bundle the entire operating system, thus making it lightweight and efficient.

Getting ready

Setting up all three packages could be quite cumbersome depending on the operating system utilized. The following dockerfile code can be used to set up an environment with tensorflow, mxnet with GPU, and h2o installed with all the dependencies:

FROM chstone/mxnet-gpu:latest
MAINTAINER PKS Prakash <prakash5801>


# Install dependencies
RUN apt-get update && apt-get install -y
 python2.7 
 python-pip 
 python-dev 
 ipython 
 ipython-notebook 
 python-pip 
 default-jre


# Install pip and Jupyter notebook
RUN pip install --upgrade pip && 
 pip install jupyter

# Add R to Jupyter kernel 
RUN Rscript -e "install.packages(c('repr', 'IRdisplay', 'crayon', 'pbdZMQ'), dependencies=TRUE, repos='https://cran.rstudio.com')" && 
 Rscript -e "library(devtools); library(methods); options(repos=c(CRAN='https://cran.rstudio.com')); devtools::install_github('IRkernel/IRkernel')" && 
 Rscript -e "library(IRkernel); IRkernel::installspec(name = 'ir32', displayname = 'R 3.2')" 

# Install H2O
RUN Rscript -e "install.packages('h2o', dependencies=TRUE, repos='http://cran.rstudio.com')"

# Install tensorflow fixing the proxy port
RUN pip install tensorflow-gpu
RUN Rscript -e "library(devtools); devtools::install_github('rstudio/tensorflow')"

The current image is created on top of the chstone/mxnet-gpu Docker image.

Note

The chstone/mxnet-gpu is a docker hub repository at https://hub.docker.com/r/chstone/mxnet-gpu/.

How to do it...

Docker will all dependencies can be installed using following steps:

  1. Save the preceding code to a location with a name, say, Dockerfile.
  2. Using the command line, go to the file location and use the following command and it is also shown in the screenshot after the command:
docker run -t "TagName:FILENAME"

Building the docker image

  1. Access the image using the docker images command as follows:

View docker images

  1. Docker images can be executed using the following command:
docker run -it -p 8888:8888 -p 54321:54321 <<IMAGE ID>>

Running a Docker image

Here, the option -i is for interactive mode and -t is to allocate --tty. The option -p is used to forward the port. As we will be running Jupyter on port 8888 and H2O on 54321, we have forwarded both ports to accessible from the local browser.

There's more...

More options for Docker can be checked out using docker run --help.

You have been reading a chapter from
R Deep Learning Cookbook
Published in: Aug 2017 Publisher: Packt ISBN-13: 9781787121089
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