The sample data you'll need for this chapter is available in this book's GitHub repository: https://github.com/danmaclean/R_Bioinformatics_Cookbook. If you want to use the code examples as they are written, then you will need to make sure that the data is in a subdirectory of your working directory.
Here are the R packages that you'll need. You can install them with install.packages("package_name"). The packages listed under Bioconductor need to be installed with a dedicated installer, which is also described in this section. If you need to do anything else, the installation steps will be described in the recipes in which the packages are used:
- circlize
- dplyr
- ggplot2
- ggridges
- gplots
- plotly
- RColorBrewer
- readr
- magrittr
- tidyr
- viridis
Bioconductor is huge and has its own installation manager. You can install the manager with the following...
