All Products

Best Sellers

New Releases

Books

Videos

Audiobooks

Free Learning

R Bioinformatics Cookbook - Second Edition

You're reading from R Bioinformatics Cookbook - Second Edition

Product type Book

Published in Oct 2023

Publisher Packt

ISBN-13 9781837634279

Pages 396 pages

Edition 2nd Edition

Languages

Concepts

Author (1):

Dan MacLean

Table of Contents (16) Chapters

Preface

1. Chapter 1: Setting Up Your R Bioinformatics Working Environment

2. Chapter 2: Loading, Tidying, and Cleaning Data in the tidyverse

3. Chapter 3: ggplot2 and Extensions for Publication Quality Plots

4. Chapter 4: Using Quarto to Make Data-Rich Reports, Presentations, and Websites

5. Chapter 5: Easily Performing Statistical Tests Using Linear Models

6. Chapter 6: Performing Quantitative RNA-seq

7. Chapter 7: Finding Genetic Variants with HTS Data

8. Chapter 8: Searching Gene and Protein Sequences for Domains and Motifs

9. Chapter 9: Phylogenetic Analysis and Visualization

10. Chapter 10: Analyzing Gene Annotations

11. Chapter 11: Machine Learning with mlr3

12. Chapter 12: Functional Programming with purrr and base R

13. Chapter 13: Turbo-Charging Development in R with ChatGPT

14. Index

Why subscribe?

15. Other Books You May Enjoy

Using linear models and ANOVA to compare multiple groups in multiple variables

Two-way ANOVA is a statistical method used to analyze the effects of two categorical independent variables, also known as factors, on a continuous dependent variable. The two independent variables can be either fixed or random.

The main purpose of two-way ANOVA is to examine whether there is a significant interaction between the two independent variables, as well as to determine the main effects of each independent variable on the dependent variable.

The analysis involves calculating the sum of squares for each of the effects and the interaction and comparing these values to their respective degrees of freedom to obtain F ratios. The F ratios are then compared to critical values from an F-distribution to determine whether the effects are statistically significant.

Like the one-way ANOVA seen in the Using a linear model and ANOVA to compare multiple groups in a single variable recipe, the basis is...

The rest of the chapter is locked

Register for a free Packt account to unlock a world of extra content!

A free Packt account unlocks extra newsletters, articles, discounted offers, and much more. Start advancing your knowledge today.

Unlock this book and the full library FREE for 7 days

Get unlimited access to 7000+ expert-authored eBooks and videos courses covering every tech area you can think of

Start free trial

Renews at $15.99/month. Cancel anytime}

Authors (1)

Dan MacLean

Professor Dan MacLean has a PhD in molecular biology from the University of Cambridge and gained postdoctoral experience in genomics and bioinformatics at Stanford University in California. Dan is now an honorary professor at the School of Computing Sciences at the University of East Anglia. He has worked in bioinformatics and plant pathogenomics, specializing in R and Bioconductor, and has developed analytical workflows in bioinformatics, genomics, genetics, image analysis, and proteomics at the Sainsbury Laboratory since 2006. Dan has developed and published software packages in R, Ruby, and Python, with over 100,000 downloads combined.

See other products by Dan MacLean

Personalised recommendations for you

Based on your interests and search pattern

Engineering Manager's Handbook

Engineering Manager's Handbook

Engineering Manager's Handbook is a comprehensive guide for managers to excel in their role, foster customer-centric digital products, learn leadership, team building, and balancing technical work with management. You’ll also explore how to develop trust, authority, and collaboration to drive success and make a lasting impact.

Sep 2023 9 hours 16 minutes

C++ Game Animation Programming

C++ Game Animation Programming

Video game characters have a fascinating history, evolving from simple 2D sprites to high-polygon 3D models. Take a look behind the curtain and learn how to build a 3D renderer, load character models, play animations and blend between them, and create large crowds of animated people with this comprehensive C++ game animation programming guide.

Dec 2023 16 hours 0 minutes

Gamification for Product Excellence

Gamification for Product Excellence

This book helps you to take your product management strategy to the next level by standing out in crowded markets. Along with boosting user adoption rates by creating engaging products that incorporate playful elements, learn gamification theory and how to integrate it into your design, product development, and product management processes.

Sep 2023 11 hours 40 minutes

Supercharging Productivity with Trello

Supercharging Productivity with Trello

Supercharging Productivity with Trello is the ultimate guide for anyone looking to boost their productivity with digital tools. Whether you're new to Trello or a seasoned professional, this book covers everything from core features to advanced automation, and Power-Ups.

Aug 2023 11 hours 24 minutes

Automate It with Zapier and Generative AI

Automate It with Zapier and Generative AI

This comprehensive guide takes you through the concepts of business process automation, showing you how Zapier can facilitate it without having to write code and helping you to boost productivity. You’ll learn how to save time, reduce costs, and make your business recession-proof by using Zapier to automate tasks in your cloud-based business apps.

Aug 2023 23 hours 32 minutes

Scoring to Picture in Logic Pro

Scoring to Picture in Logic Pro

In this book, you’ll explore a variety of techniques to synchronize music to picture using Logic Pro. Though this is not a technical manual, it will teach you how to make the best use of Logic Pro and how to wield this technology to maximize your potential when scoring to picture.

Sep 2023 13 hours 44 minutes

Mastering Information Security Compliance Management

Mastering Information Security Compliance Management

This concise book equips you with the knowledge and practices needed to establish and maintain an effective information security management system. The chapters provide insights into ISO/IEC 27001/27002:2022, risk management, ISMS development, incident management, audit processes, and strategies for continuous improvement.

Aug 2023 7 hours 52 minutes

Implementing Atlassian Confluence

Implementing Atlassian Confluence

Implementing Atlassian Confluence provides both a high-level overview and an insightful path for remote collaboration with Atlassian Confluence. With this multi-layered yet practical guide, you’ll be able to set up Confluence-based collaboration with minimum external consultancy services to ensure smooth and close coordination between teams.

Sep 2023 13 hours 32 minutes

R Bioinformatics Cookbook

R Bioinformatics Cookbook

This book takes a unique problem–solution approach to handling complex tasks in the bioinformatics domain using different datasets present in the book. With the help of real-world examples, you’ll learn to put each independent recipe to use to tackle problems in the field of bioinformatics.

Oct 2023 13 hours 12 minutes

Build Your Own Metaverse with Unity

Build Your Own Metaverse with Unity

Build Your own Metaverse with Unity is a practical guide for developers to create their own metaverse - a virtual world with infinite possibilities. It empowers you to identify gaps in existing metaverses and improve upon them, enabling you to shape your virtual world.

Sep 2023 19 hours 32 minutes