Search icon CANCEL
Subscription
0
Cart icon
Cart
Close icon
You have no products in your basket yet
Save more on your purchases!
Savings automatically calculated. No voucher code required
Arrow left icon
All Products
Best Sellers
New Releases
Books
Videos
Audiobooks
Learning Hub
Newsletters
Free Learning
Arrow right icon
Arrow up icon
GO TO TOP
R Bioinformatics Cookbook - Second Edition

You're reading from  R Bioinformatics Cookbook - Second Edition

Product type Book
Published in Oct 2023
Publisher Packt
ISBN-13 9781837634279
Pages 396 pages
Edition 2nd Edition
Languages
Author (1):
Dan MacLean Dan MacLean
Profile icon Dan MacLean
Toc

Table of Contents (16) Chapters close

Preface 1. Chapter 1: Setting Up Your R Bioinformatics Working Environment 2. Chapter 2: Loading, Tidying, and Cleaning Data in the tidyverse 3. Chapter 3: ggplot2 and Extensions for Publication Quality Plots 4. Chapter 4: Using Quarto to Make Data-Rich Reports, Presentations, and Websites 5. Chapter 5: Easily Performing Statistical Tests Using Linear Models 6. Chapter 6: Performing Quantitative RNA-seq 7. Chapter 7: Finding Genetic Variants with HTS Data 8. Chapter 8: Searching Gene and Protein Sequences for Domains and Motifs 9. Chapter 9: Phylogenetic Analysis and Visualization 10. Chapter 10: Analyzing Gene Annotations 11. Chapter 11: Machine Learning with mlr3 12. Chapter 12: Functional Programming with purrr and base R 13. Chapter 13: Turbo-Charging Development in R with ChatGPT 14. Index 15. Other Books You May Enjoy

Making predictions using linear models

Linear models are commonly used in bioinformatics for prediction tasks due to their simplicity, interpretability, and ability to handle high-dimensional datasets. In bioinformatics, researchers often work with large datasets that have a large number of features (such as gene expression data or sequence data), making it challenging to analyze them with more complex models. Linear models offer a straightforward and computationally efficient way to analyze these datasets. Linear models can help researchers identify genes or genetic variants that are associated with a particular trait or disease. They can also be used in feature selection, which is an important step in bioinformatics data analysis. Feature selection aims to identify the most relevant features (genes, proteins, etc.) that are associated with the outcome of interest (disease, drug response, etc.). Linear models can be used to rank features based on their importance and select the most...

lock icon The rest of the chapter is locked
Register for a free Packt account to unlock a world of extra content!
A free Packt account unlocks extra newsletters, articles, discounted offers, and much more. Start advancing your knowledge today.
Unlock this book and the full library FREE for 7 days
Get unlimited access to 7000+ expert-authored eBooks and videos courses covering every tech area you can think of
Renews at $15.99/month. Cancel anytime}