Search icon CANCEL
Subscription
0
Cart icon
Your Cart (0 item)
Close icon
You have no products in your basket yet
Arrow left icon
Explore Products
Best Sellers
New Releases
Books
Videos
Audiobooks
Learning Hub
Free Learning
Arrow right icon
Python Data Analysis, Second Edition
Python Data Analysis, Second Edition

Python Data Analysis, Second Edition: Data manipulation and complex data analysis with Python , Second Edition

Arrow left icon
Profile Icon Idris
Arrow right icon
NZ$14.99 NZ$64.99
Full star icon Full star icon Full star icon Full star icon Empty star icon 4 (4 Ratings)
eBook Mar 2017 330 pages 2nd Edition
eBook
NZ$14.99 NZ$64.99
Paperback
NZ$80.99
Subscription
Free Trial
Arrow left icon
Profile Icon Idris
Arrow right icon
NZ$14.99 NZ$64.99
Full star icon Full star icon Full star icon Full star icon Empty star icon 4 (4 Ratings)
eBook Mar 2017 330 pages 2nd Edition
eBook
NZ$14.99 NZ$64.99
Paperback
NZ$80.99
Subscription
Free Trial
eBook
NZ$14.99 NZ$64.99
Paperback
NZ$80.99
Subscription
Free Trial

What do you get with eBook?

Product feature icon Instant access to your Digital eBook purchase
Product feature icon Download this book in EPUB and PDF formats
Product feature icon Access this title in our online reader with advanced features
Product feature icon DRM FREE - Read whenever, wherever and however you want
OR
Modal Close icon
Payment Processing...
tick Completed

Billing Address

Table of content icon View table of contents Preview book icon Preview Book

Python Data Analysis, Second Edition

Chapter 2. NumPy Arrays

Now that we have worked on a real example utilizing the foundational data analysis libraries from SciPy stack, it's time to learn about NumPy arrays. This chapter acquaints you with the fundamentals of NumPy arrays. At the end of this chapter, you will have a basic understanding of NumPy arrays and related functions.

The topics we will address in this chapter are as follows:

  • The NumPy array object
  • Creating a multidimensional array
  • Selecting NumPy array elements
  • NumPy numerical types
  • One-dimensional slicing and indexing
  • Manipulating array shapes
  • Creating array views and copies
  • Fancy indexing
  • Indexing with a list of locations
  • Indexing NumPy arrays with Booleans
  • Broadcasting NumPy arrays

You may want to open the ch-02.ipynb file in Jupyter Notebook to follow along the examples in this chapter or type them in a new notebook of your own.

The NumPy array object

NumPy provides a multidimensional array object called ndarray. NumPy arrays are typed arrays of a fixed size. Python lists are heterogeneous and thus elements of a list may contain any object type, while NumPy arrays are homogenous and can contain objects of only one type. An ndarray consists of two parts, which are as follows:

  • The actual data that is stored in a contiguous block of memory
  • The metadata describing the actual data

Since the actual data is stored in a contiguous block of memory, hence loading of the large dataset as ndarray, it is affected by the availability of a large enough contiguous block of memory. Most of the array methods and functions in NumPy leave the actual data unaffected and only modify the metadata.

We have already discovered in the preceding chapter how to produce an array by applying the arange() function. Actually, we made a one-dimensional array that held a set of numbers. The ndarray can have more than a single dimension.

Advantages of...

Creating a multidimensional array

Now that we know how to create a vector, we are set to create a multidimensional NumPy array. After we produce the matrix we will again need to show it, as demonstrated in the following code snippets:

  1. Create a multidimensional array as follows:
            In: m = np.array([np.arange(2), np.arange(2)]) 
            In: m 
            Out: 
            array([[0, 1], 
                   [0, 1]]) 
    
  2. We can show the array shape as follows:
            In: m.shape 
            Out: (2, 2) 
    

We made a 2x2 array with the arange() subroutine. The array() function creates an array from an object that you pass to it. The object has to be an array, for example, a Python list. In the previous example, we passed a list of arrays. The object is the only required parameter of the array() function. NumPy functions tend to have a heap of optional arguments with predefined default options.

Selecting NumPy array elements

From time to time, we will wish to select a specific constituent of an array. We will take a look at how to do this, but to kick off, let's make a 2x2 matrix again:

In: a = np.array([[1,2],[3,4]]) 
In: a 
Out: 
array([[1, 2], 
       [3, 4]]) 

The matrix was made this time by giving the array() function a list of lists. We will now choose each item of the matrix one at a time, as shown in the following code snippet. Recall that the index numbers begin from 0:

In: a[0,0] 
Out: 1 
In: a[0,1] 
Out: 2 
In: a[1,0] 
Out: 3 
In: a[1,1] 
Out: 4 

As you can see, choosing elements of an array is fairly simple. For the array a, we just employ the notation a[m,n], where m and n are the indices of the item in the array. Have a look at the following figure for your reference:

Selecting NumPy array elements

NumPy numerical types

Python has an integer type, a float type, and complex type; nonetheless, this is not sufficient for scientific calculations. In practice, we still demand more data types with varying precisions and, consequently, different storage sizes of the type. For this reason, NumPy has many more data types. The bulk of the NumPy mathematical types end with a number. This number designates the count of bits related to the type. The following table (adapted from the NumPy user guide) presents an overview of NumPy numerical types:

Type

Description

bool

Boolean (True or False) stored as a bit

inti

Platform integer (normally either int32 or int64)

int8

Byte (-128 to 127)

int16

Integer (-32768 to 32767)

int32

Integer (-2 ** 31 to 2 ** 31 -1)

int64

Integer (-2 ** 63 to 2 ** 63 -1)

uint8

Unsigned integer (0 to 255)

uint16

Unsigned integer (0 to 65535)

uint32

Unsigned integer (0 to 2 ** 32 - 1)

uint64

Unsigned integer (0 to 2 ** 64 - 1)

...

One-dimensional slicing and indexing

Slicing of one-dimensional NumPy arrays works just like the slicing of standard Python lists. Let's define an array containing the numbers 0, 1, 2, and so on up to and including 8. We can select a part of the array from indexes 3 to 7, which extracts the elements of the arrays 3 through 6:

In: a = np.arange(9) 
In: a[3:7] 
Out: array([3, 4, 5, 6]) 

We can choose elements from an index of 0 to 7 with an increment of 2:

In: a[:7:2] 
Out: array([0, 2, 4, 6]) 

Just as in Python, we can use negative indices and reverse the array:

In: a[::-1] 
Out: array([8, 7, 6, 5, 4, 3, 2, 1, 0]) 

The NumPy array object


NumPy provides a multidimensional array object called ndarray. NumPy arrays are typed arrays of a fixed size. Python lists are heterogeneous and thus elements of a list may contain any object type, while NumPy arrays are homogenous and can contain objects of only one type. An ndarray consists of two parts, which are as follows:

  • The actual data that is stored in a contiguous block of memory

  • The metadata describing the actual data

Since the actual data is stored in a contiguous block of memory, hence loading of the large dataset as ndarray, it is affected by the availability of a large enough contiguous block of memory. Most of the array methods and functions in NumPy leave the actual data unaffected and only modify the metadata.

We have already discovered in the preceding chapter how to produce an array by applying the arange() function. Actually, we made a one-dimensional array that held a set of numbers. The ndarray can have more than a single dimension.

Advantages of...

Creating a multidimensional array


Now that we know how to create a vector, we are set to create a multidimensional NumPy array. After we produce the matrix we will again need to show it, as demonstrated in the following code snippets:

  1. Create a multidimensional array as follows:

            In: m = np.array([np.arange(2), np.arange(2)]) 
            In: m 
            Out: 
            array([[0, 1], 
                   [0, 1]]) 
    
  2. We can show the array shape as follows:

            In: m.shape 
            Out: (2, 2) 
    

We made a 2x2 array with the arange() subroutine. The array() function creates an array from an object that you pass to it. The object has to be an array, for example, a Python list. In the previous example, we passed a list of arrays. The object is the only required parameter of the array() function. NumPy functions tend to have a heap of optional arguments with predefined default options.

Selecting NumPy array elements


From time to time, we will wish to select a specific constituent of an array. We will take a look at how to do this, but to kick off, let's make a 2x2 matrix again:

In: a = np.array([[1,2],[3,4]]) 
In: a 
Out: 
array([[1, 2], 
       [3, 4]]) 

The matrix was made this time by giving the array() function a list of lists. We will now choose each item of the matrix one at a time, as shown in the following code snippet. Recall that the index numbers begin from 0:

In: a[0,0] 
Out: 1 
In: a[0,1] 
Out: 2 
In: a[1,0] 
Out: 3 
In: a[1,1] 
Out: 4 

As you can see, choosing elements of an array is fairly simple. For the array a, we just employ the notation a[m,n], where m and n are the indices of the item in the array. Have a look at the following figure for your reference:

NumPy numerical types


Python has an integer type, a float type, and complex type; nonetheless, this is not sufficient for scientific calculations. In practice, we still demand more data types with varying precisions and, consequently, different storage sizes of the type. For this reason, NumPy has many more data types. The bulk of the NumPy mathematical types end with a number. This number designates the count of bits related to the type. The following table (adapted from the NumPy user guide) presents an overview of NumPy numerical types:

Type

Description

bool

Boolean (True or False) stored as a bit

inti

Platform integer (normally either int32 or int64)

int8

Byte (-128 to 127)

int16

Integer (-32768 to 32767)

int32

Integer (-2 ** 31 to 2 ** 31 -1)

int64

Integer (-2 ** 63 to 2 ** 63 -1)

uint8

Unsigned integer (0 to 255)

uint16

Unsigned integer (0 to 65535)

uint32

Unsigned integer (0 to 2 ** 32 - 1)

uint64

Unsigned integer (0 to 2 ** 64 - 1)

float16...

One-dimensional slicing and indexing


Slicing of one-dimensional NumPy arrays works just like the slicing of standard Python lists. Let's define an array containing the numbers 0, 1, 2, and so on up to and including 8. We can select a part of the array from indexes 3 to 7, which extracts the elements of the arrays 3 through 6:

In: a = np.arange(9) 
In: a[3:7] 
Out: array([3, 4, 5, 6]) 

We can choose elements from an index of 0 to 7 with an increment of 2:

In: a[:7:2] 
Out: array([0, 2, 4, 6]) 

Just as in Python, we can use negative indices and reverse the array:

In: a[::-1] 
Out: array([8, 7, 6, 5, 4, 3, 2, 1, 0]) 

Manipulating array shapes


We have already learned about the reshape() function. Another repeating chore is the flattening of arrays. Flattening in this setting entails transforming a multidimensional array into a one-dimensional array. Let us create an array b that we shall use for practicing the further examples:

In: b = np.arange(24).reshape(2,3,4) 
 
In: print(b) 
 
Out: [[[ 0,  1,  2,  3], 
        [ 4,  5,  6,  7], 
        [ 8,  9, 10, 11]], 
 
       [[12, 13, 14, 15], 
        [16, 17, 18, 19], 
        [20, 21, 22, 23]]]) 

We can manipulate array shapes using the following functions:

  • Ravel: We can accomplish this with the ravel() function as follows:

            In: b 
            Out: 
            array([[[ 0,  1,  2,  3], 
                    [ 4,  5,  6,  7], 
                    [ 8,  9, 10, 11]], 
                   [[12, 13, 14, 15], 
                    [16, 17, 18, 19], 
                    [20, 21, 22, 23]]]) 
    ...

Creating array views and copies


In the example about ravel(), views were brought up. Views should not be confused with the construct of database views. Views in the NumPy universe are not read-only and you don't have the possibility to protect the underlying information. It is crucial to know when we are handling a shared array view and when we have a replica of the array data. A slice of an array, for example, will produce a view. This entails that if you assign the slice to a variable and then alter the underlying array, the value of this variable will change. We will create an array from the face picture in the SciPy package, and then create a view and alter it at the final stage:

  1. Get the face image:

            face = scipy.misc.face() 
    
  2. Create a copy of the face array:

            acopy = face.copy() 
    
  3. Create a view of the array:

            aview = face.view() 
    
  4. Set all the values in the view to 0 with a flat iterator:

            aview.flat = 0 
    

The final outcome is that only one of the...

Fancy indexing


Fancy indexing is indexing that does not involve integers or slices, which is conventional indexing. In this tutorial, we will practice fancy indexing to set the diagonal values of the Lena photo to 0. This will draw black lines along the diagonals, crossing through them.

The following is the code for this example:

import scipy.misc 
import matplotlib.pyplot as plt 
 
face = scipy.misc.face() 
xmax = face.shape[0] 
ymax = face.shape[1] 
face=face[:min(xmax,ymax),:min(xmax,ymax)] 
xmax = face.shape[0] 
ymax = face.shape[1] 
face[range(xmax), range(ymax)] = 0 
face[range(xmax-1,-1,-1), range(ymax)] = 0 
plt.imshow(face) 
plt.show() 

The following is a brief explanation of the preceding code:

  1. Set the values of the first diagonal to 0.

    To set the diagonal values to 0, we need to specify two different ranges for the x and y values (coordinates in a Cartesian coordinate system):

            face[range(xmax), range(ymax)] =...
Left arrow icon Right arrow icon
Download code icon Download Code

Key benefits

  • Find, manipulate, and analyze your data using the Python 3.5 libraries
  • Perform advanced, high-performance linear algebra and mathematical calculations with clean and efficient Python code
  • An easy-to-follow guide with realistic examples that are frequently used in real-world data analysis projects.

Description

Data analysis techniques generate useful insights from small and large volumes of data. Python, with its strong set of libraries, has become a popular platform to conduct various data analysis and predictive modeling tasks. With this book, you will learn how to process and manipulate data with Python for complex analysis and modeling. We learn data manipulations such as aggregating, concatenating, appending, cleaning, and handling missing values, with NumPy and Pandas. The book covers how to store and retrieve data from various data sources such as SQL and NoSQL, CSV fies, and HDF5. We learn how to visualize data using visualization libraries, along with advanced topics such as signal processing, time series, textual data analysis, machine learning, and social media analysis. The book covers a plethora of Python modules, such as matplotlib, statsmodels, scikit-learn, and NLTK. It also covers using Python with external environments such as R, Fortran, C/C++, and Boost libraries.

Who is this book for?

This book is for programmers, scientists, and engineers who have the knowledge of Python and know the basics of data science. It is for those who wish to learn different data analysis methods using Python 3.5 and its libraries. This book contains all the basic ingredients you need to become an expert data analyst.

What you will learn

  • Install open source Python modules such NumPy, SciPy, Pandas, stasmodels, scikit-learn,theano, keras, and tensorflow on various platforms
  • Prepare and clean your data, and use it for exploratory analysis
  • Manipulate your data with Pandas
  • Retrieve and store your data from RDBMS, NoSQL, and distributed filesystems such as HDFS and HDF5
  • Visualize your data with open source libraries such as matplotlib, bokeh, and plotly
  • Learn about various machine learning methods such as supervised, unsupervised, probabilistic, and Bayesian
  • Understand signal processing and time series data analysis
  • Get to grips with graph processing and social network analysis

Product Details

Country selected
Publication date, Length, Edition, Language, ISBN-13
Publication date : Mar 27, 2017
Length: 330 pages
Edition : 2nd
Language : English
ISBN-13 : 9781787127920
Category :
Languages :
Concepts :

What do you get with eBook?

Product feature icon Instant access to your Digital eBook purchase
Product feature icon Download this book in EPUB and PDF formats
Product feature icon Access this title in our online reader with advanced features
Product feature icon DRM FREE - Read whenever, wherever and however you want
OR
Modal Close icon
Payment Processing...
tick Completed

Billing Address

Product Details

Publication date : Mar 27, 2017
Length: 330 pages
Edition : 2nd
Language : English
ISBN-13 : 9781787127920
Category :
Languages :
Concepts :

Packt Subscriptions

See our plans and pricing
Modal Close icon
$19.99 billed monthly
Feature tick icon Unlimited access to Packt's library of 7,000+ practical books and videos
Feature tick icon Constantly refreshed with 50+ new titles a month
Feature tick icon Exclusive Early access to books as they're written
Feature tick icon Solve problems while you work with advanced search and reference features
Feature tick icon Offline reading on the mobile app
Feature tick icon Simple pricing, no contract
$199.99 billed annually
Feature tick icon Unlimited access to Packt's library of 7,000+ practical books and videos
Feature tick icon Constantly refreshed with 50+ new titles a month
Feature tick icon Exclusive Early access to books as they're written
Feature tick icon Solve problems while you work with advanced search and reference features
Feature tick icon Offline reading on the mobile app
Feature tick icon Choose a DRM-free eBook or Video every month to keep
Feature tick icon PLUS own as many other DRM-free eBooks or Videos as you like for just NZ$7 each
Feature tick icon Exclusive print discounts
$279.99 billed in 18 months
Feature tick icon Unlimited access to Packt's library of 7,000+ practical books and videos
Feature tick icon Constantly refreshed with 50+ new titles a month
Feature tick icon Exclusive Early access to books as they're written
Feature tick icon Solve problems while you work with advanced search and reference features
Feature tick icon Offline reading on the mobile app
Feature tick icon Choose a DRM-free eBook or Video every month to keep
Feature tick icon PLUS own as many other DRM-free eBooks or Videos as you like for just NZ$7 each
Feature tick icon Exclusive print discounts

Frequently bought together


Stars icon
Total NZ$ 251.97
Python Machine Learning By Example
NZ$80.99
Python Deep Learning
NZ$89.99
Python Data Analysis, Second Edition
NZ$80.99
Total NZ$ 251.97 Stars icon
Banner background image

Table of Contents

15 Chapters
1. Getting Started with Python Libraries Chevron down icon Chevron up icon
2. NumPy Arrays Chevron down icon Chevron up icon
3. The Pandas Primer Chevron down icon Chevron up icon
4. Statistics and Linear Algebra Chevron down icon Chevron up icon
5. Retrieving, Processing, and Storing Data Chevron down icon Chevron up icon
6. Data Visualization Chevron down icon Chevron up icon
7. Signal Processing and Time Series Chevron down icon Chevron up icon
8. Working with Databases Chevron down icon Chevron up icon
9. Analyzing Textual Data and Social Media Chevron down icon Chevron up icon
10. Predictive Analytics and Machine Learning Chevron down icon Chevron up icon
11. Environments Outside the Python Ecosystem and Cloud Computing Chevron down icon Chevron up icon
12. Performance Tuning, Profiling, and Concurrency Chevron down icon Chevron up icon
A. Key Concepts Chevron down icon Chevron up icon
B. Useful Functions Chevron down icon Chevron up icon
C. Online Resources Chevron down icon Chevron up icon

Customer reviews

Rating distribution
Full star icon Full star icon Full star icon Full star icon Empty star icon 4
(4 Ratings)
5 star 50%
4 star 25%
3 star 0%
2 star 25%
1 star 0%
sutha May 06, 2017
Full star icon Full star icon Full star icon Full star icon Full star icon 5
If you are into data analysis then you have to know python and this book helps to understand various libraries available to use. Also the libraries are well classified by their usage area!Recommended to read...
Amazon Verified review Amazon
AJ Apr 27, 2018
Full star icon Full star icon Full star icon Full star icon Full star icon 5
Bought this book to lay the foundations for Data Analysis and apply to Geospatial datasets- its worth it!
Amazon Verified review Amazon
boots with the fur Apr 05, 2017
Full star icon Full star icon Full star icon Full star icon Empty star icon 4
I was one of the technical reviewers for this book, it provides a strong foundation to begin analysing and visualizing large datasets in python. If you have wanted to analyze baseball stats and salaries, ala moneyball, or view patterns in anual solar flare events. It also explores learning algorithms for sentiment analysis and predictive patterns. While several chapters could really use a whole book all of their own, this will provide you with the tools that you need in order to begin exploring large data in python, and it even has a chapter to help you tune your performance once your data gets even bigger.
Amazon Verified review Amazon
Anand Nov 25, 2017
Full star icon Full star icon Empty star icon Empty star icon Empty star icon 2
Good but the author jumps from one topic to another without covering by leaving the user in confusion.
Amazon Verified review Amazon
Get free access to Packt library with over 7500+ books and video courses for 7 days!
Start Free Trial

FAQs

How do I buy and download an eBook? Chevron down icon Chevron up icon

Where there is an eBook version of a title available, you can buy it from the book details for that title. Add either the standalone eBook or the eBook and print book bundle to your shopping cart. Your eBook will show in your cart as a product on its own. After completing checkout and payment in the normal way, you will receive your receipt on the screen containing a link to a personalised PDF download file. This link will remain active for 30 days. You can download backup copies of the file by logging in to your account at any time.

If you already have Adobe reader installed, then clicking on the link will download and open the PDF file directly. If you don't, then save the PDF file on your machine and download the Reader to view it.

Please Note: Packt eBooks are non-returnable and non-refundable.

Packt eBook and Licensing When you buy an eBook from Packt Publishing, completing your purchase means you accept the terms of our licence agreement. Please read the full text of the agreement. In it we have tried to balance the need for the ebook to be usable for you the reader with our needs to protect the rights of us as Publishers and of our authors. In summary, the agreement says:

  • You may make copies of your eBook for your own use onto any machine
  • You may not pass copies of the eBook on to anyone else
How can I make a purchase on your website? Chevron down icon Chevron up icon

If you want to purchase a video course, eBook or Bundle (Print+eBook) please follow below steps:

  1. Register on our website using your email address and the password.
  2. Search for the title by name or ISBN using the search option.
  3. Select the title you want to purchase.
  4. Choose the format you wish to purchase the title in; if you order the Print Book, you get a free eBook copy of the same title. 
  5. Proceed with the checkout process (payment to be made using Credit Card, Debit Cart, or PayPal)
Where can I access support around an eBook? Chevron down icon Chevron up icon
  • If you experience a problem with using or installing Adobe Reader, the contact Adobe directly.
  • To view the errata for the book, see www.packtpub.com/support and view the pages for the title you have.
  • To view your account details or to download a new copy of the book go to www.packtpub.com/account
  • To contact us directly if a problem is not resolved, use www.packtpub.com/contact-us
What eBook formats do Packt support? Chevron down icon Chevron up icon

Our eBooks are currently available in a variety of formats such as PDF and ePubs. In the future, this may well change with trends and development in technology, but please note that our PDFs are not Adobe eBook Reader format, which has greater restrictions on security.

You will need to use Adobe Reader v9 or later in order to read Packt's PDF eBooks.

What are the benefits of eBooks? Chevron down icon Chevron up icon
  • You can get the information you need immediately
  • You can easily take them with you on a laptop
  • You can download them an unlimited number of times
  • You can print them out
  • They are copy-paste enabled
  • They are searchable
  • There is no password protection
  • They are lower price than print
  • They save resources and space
What is an eBook? Chevron down icon Chevron up icon

Packt eBooks are a complete electronic version of the print edition, available in PDF and ePub formats. Every piece of content down to the page numbering is the same. Because we save the costs of printing and shipping the book to you, we are able to offer eBooks at a lower cost than print editions.

When you have purchased an eBook, simply login to your account and click on the link in Your Download Area. We recommend you saving the file to your hard drive before opening it.

For optimal viewing of our eBooks, we recommend you download and install the free Adobe Reader version 9.