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Machine Learning in Biotechnology and Life Sciences

You're reading from   Machine Learning in Biotechnology and Life Sciences Build machine learning models using Python and deploy them on the cloud

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Product type Paperback
Published in Jan 2022
Publisher Packt
ISBN-13 9781801811910
Length 408 pages
Edition 1st Edition
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Author (1):
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Saleh Alkhalifa Saleh Alkhalifa
Author Profile Icon Saleh Alkhalifa
Saleh Alkhalifa
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Toc

Table of Contents (17) Chapters Close

Preface 1. Section 1: Getting Started with Data
2. Chapter 1: Introducing Machine Learning for Biotechnology FREE CHAPTER 3. Chapter 2: Introducing Python and the Command Line 4. Chapter 3: Getting Started with SQL and Relational Databases 5. Chapter 4: Visualizing Data with Python 6. Section 2: Developing and Training Models
7. Chapter 5: Understanding Machine Learning 8. Chapter 6: Unsupervised Machine Learning 9. Chapter 7: Supervised Machine Learning 10. Chapter 8: Understanding Deep Learning 11. Chapter 9: Natural Language Processing 12. Chapter 10: Exploring Time Series Analysis 13. Section 3: Deploying Models to Users
14. Chapter 11: Deploying Models with Flask Applications 15. Chapter 12: Deploying Applications to the Cloud 16. Other Books You May Enjoy

Summary

Congratulations! We finally made it to the end of a very dense, yet very informative chapter. In this chapter, we learned quite a few different things. In the first half of this chapter, we explored the realm of classification and demonstrated the application of a number of models using the single-cell RNA dataset – a classical application in the field of biotechnology and life sciences. We learned about a number of different models, including KNNs, SVMs, decision trees, random forests, and XGBoost. We then moved our data and code to GCP, where we stored our data in BigQuery, and provisioned a notebook instance to run our code in. In addition, we learned how to automate some of the manual and labor-intensive parts of the model development process as it pertains to the protein classification dataset using auto-sklearn. Finally, we took advantage of GCP's AutoML application to develop a classification model for our dataset.

In the second half of this chapter, we...

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