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Deep Learning for Genomics

You're reading from   Deep Learning for Genomics Data-driven approaches for genomics applications in life sciences and biotechnology

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Product type Paperback
Published in Nov 2022
Publisher Packt
ISBN-13 9781804615447
Length 270 pages
Edition 1st Edition
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Author (1):
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Upendra Kumar Devisetty Upendra Kumar Devisetty
Author Profile Icon Upendra Kumar Devisetty
Upendra Kumar Devisetty
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Table of Contents (18) Chapters Close

Preface 1. Part 1 – Machine Learning in Genomics
2. Chapter 1: Introducing Machine Learning for Genomics FREE CHAPTER 3. Chapter 2: Genomics Data Analysis 4. Chapter 3: Machine Learning Methods for Genomic Applications 5. Part 2 – Deep Learning for Genomic Applications
6. Chapter 4: Deep Learning for Genomics 7. Chapter 5: Introducing Convolutional Neural Networks for Genomics 8. Chapter 6: Recurrent Neural Networks in Genomics 9. Chapter 7: Unsupervised Deep Learning with Autoencoders 10. Chapter 8: GANs for Improving Models in Genomics 11. Part 3 – Operationalizing models
12. Chapter 9: Building and Tuning Deep Learning Models 13. Chapter 10: Model Interpretability in Genomics 14. Chapter 11: Model Deployment and Monitoring 15. Chapter 12: Challenges, Pitfalls, and Best Practices for Deep Learning in Genomics 16. Index 17. Other Books You May Enjoy

Summary

A successful application of DL for a genomics problem heavily relies not only on developing an accurate model but also on how to make the model impactful. Model deployment is the process of transitioning a trained model built on notebooks into a production environment where it is used for prediction, classification, clustering, and other purposes. Unlike model training, deploying models requires different skills that are not traditionally taught to data scientists and other genomic scientists because these skills, such as web app development, cloud computing, and working with APIs, are more software development skills. As the boundaries between data scientists and MLEs become blurred, knowledge of model deployment will take researchers a long way. In this chapter, you were introduced to a simple workflow for deploying the built model using some open source and easy-to-implement tools. These tools are easy to use and allow you to deploy a web app that can predict TFBS in a quick...

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