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Bayesian Analysis with Python

You're reading from   Bayesian Analysis with Python A practical guide to probabilistic modeling

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Product type Paperback
Published in Jan 2024
Publisher Packt
ISBN-13 9781805127161
Length 394 pages
Edition 3rd Edition
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Author (1):
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Osvaldo Martin Osvaldo Martin
Author Profile Icon Osvaldo Martin
Osvaldo Martin
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Table of Contents (15) Chapters Close

Preface
1. Chapter 1 Thinking Probabilistically FREE CHAPTER 2. Chapter 2 Programming Probabilistically 3. Chapter 3 Hierarchical Models 4. Chapter 4 Modeling with Lines 5. Chapter 5 Comparing Models 6. Chapter 6 Modeling with Bambi 7. Chapter 7 Mixture Models 8. Chapter 8 Gaussian Processes 9. Chapter 9 Bayesian Additive Regression Trees 10. Chapter 10 Inference Engines 11. Chapter 11 Where to Go Next 12. Bibliography
13. Other Books You May Enjoy
14. Index

2.2 Summarizing the posterior

Generally, the first task we will perform after sampling from the posterior is to check what the results look like. The plot_trace function from ArviZ is ideally suited to this task:

Code 2.3

az.plot_trace(idata)
PIC

Figure 2.1: A trace plot for the posterior of our_first_model

Figure 2.1 shows the default result when calling az.plot_trace; we get two subplots for each unobserved variable. The only unobserved variable in our model is θ. Notice that y is an observed variable representing the data; we do not need to sample that because we already know those values. Thus we only get two subplots. On the left, we have a Kernel Density Estimation (KDE) plot; this is like the smooth version of the histogram. Ideally, we want all chains to have a very similar KDE, like in Figure 2.1. On the right, we get the individual values at each sampling step; we get as many lines as chains. Ideally, we want it to be something that looks noisy, with no clear...

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