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Python Data Analysis, Second Edition

You're reading from   Python Data Analysis, Second Edition Data manipulation and complex data analysis with Python

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Product type Paperback
Published in Mar 2017
Publisher Packt
ISBN-13 9781787127487
Length 330 pages
Edition 2nd Edition
Languages
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Author (1):
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Ivan Idris Ivan Idris
Author Profile Icon Ivan Idris
Ivan Idris
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Table of Contents (16) Chapters Close

Preface 1. Getting Started with Python Libraries FREE CHAPTER 2. NumPy Arrays 3. The Pandas Primer 4. Statistics and Linear Algebra 5. Retrieving, Processing, and Storing Data 6. Data Visualization 7. Signal Processing and Time Series 8. Working with Databases 9. Analyzing Textual Data and Social Media 10. Predictive Analytics and Machine Learning 11. Environments Outside the Python Ecosystem and Cloud Computing 12. Performance Tuning, Profiling, and Concurrency A. Key Concepts
B. Useful Functions C. Online Resources

Clustering with affinity propagation

Clustering aims to partition data into groups called clusters. Clustering is usually unsupervised in the sense that no examples are given. Some clustering algorithms require a guess for the number of clusters, while other algorithms don't. Affinity propagation falls in the latter category. Each item in a dataset can be mapped into Euclidean space using feature values. Affinity propagation depends on a matrix containing Euclidean distances between data points. Since the matrix can quickly become quite large, we should be careful not to take up too much memory. The scikit-learn library has utilities to generate structured data. Create three data blobs as follows:

x, _ = datasets.make_blobs(n_samples=100, centers=3, n_features=2, random_state=10) 

Call the euclidean_distances() function to create the aforementioned matrix:

S = euclidean_distances(x) 

Cluster using the matrix in order to label the data with the corresponding cluster:

aff_pro = cluster...
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