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Machine Learning in Biotechnology and Life Sciences

You're reading from   Machine Learning in Biotechnology and Life Sciences Build machine learning models using Python and deploy them on the cloud

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Product type Paperback
Published in Jan 2022
Publisher Packt
ISBN-13 9781801811910
Length 408 pages
Edition 1st Edition
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Author (1):
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Saleh Alkhalifa Saleh Alkhalifa
Author Profile Icon Saleh Alkhalifa
Saleh Alkhalifa
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Toc

Table of Contents (17) Chapters Close

Preface 1. Section 1: Getting Started with Data
2. Chapter 1: Introducing Machine Learning for Biotechnology FREE CHAPTER 3. Chapter 2: Introducing Python and the Command Line 4. Chapter 3: Getting Started with SQL and Relational Databases 5. Chapter 4: Visualizing Data with Python 6. Section 2: Developing and Training Models
7. Chapter 5: Understanding Machine Learning 8. Chapter 6: Unsupervised Machine Learning 9. Chapter 7: Supervised Machine Learning 10. Chapter 8: Understanding Deep Learning 11. Chapter 9: Natural Language Processing 12. Chapter 10: Exploring Time Series Analysis 13. Section 3: Deploying Models to Users
14. Chapter 11: Deploying Models with Flask Applications 15. Chapter 12: Deploying Applications to the Cloud 16. Other Books You May Enjoy

Summary

Over the course of this chapter, we gained a strong and high-level understanding of the field of UL, its uses, and its applications. We then explored a few of the most popular ML methods as they relate to clustering and DR. Within the field of clustering, we looked over some of the most commonly used models such as hierarchical clustering, K-Means clustering, and GMMs. We learned about the differences between Euclidean distances and probabilities and how they relate to model predictions. In addition, we also applied these models to the Wisconsin Breast Cancer dataset and managed to achieve relatively high accuracy in a few of them. Within the field of DR, we gained a strong understanding of the significance of the field as it relates to the COD. We then implemented a number of models such as PCA, SVD, t-SNE, and UMAP using the single-cell RNA dataset in which we managed to reduce more than 1,400 columns down to 2. We then visualized our results using seaborn and examined the...

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