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Mastering Machine Learning with R, Second Edition

You're reading from   Mastering Machine Learning with R, Second Edition Advanced prediction, algorithms, and learning methods with R 3.x

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Product type Paperback
Published in Apr 2017
Publisher Packt
ISBN-13 9781787287471
Length 420 pages
Edition 2nd Edition
Languages
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Author (1):
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Cory Lesmeister Cory Lesmeister
Author Profile Icon Cory Lesmeister
Cory Lesmeister
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Table of Contents (17) Chapters Close

Preface 1. A Process for Success 2. Linear Regression - The Blocking and Tackling of Machine Learning FREE CHAPTER 3. Logistic Regression and Discriminant Analysis 4. Advanced Feature Selection in Linear Models 5. More Classification Techniques - K-Nearest Neighbors and Support Vector Machines 6. Classification and Regression Trees 7. Neural Networks and Deep Learning 8. Cluster Analysis 9. Principal Components Analysis 10. Market Basket Analysis, Recommendation Engines, and Sequential Analysis 11. Creating Ensembles and Multiclass Classification 12. Time Series and Causality 13. Text Mining 14. R on the Cloud 15. R Fundamentals 16. Sources

Data understanding and preparation


Let's start with loading the R packages that we will need for this chapter. As always, make sure that you have installed them first:

> library(cluster) #conduct cluster analysis
> library(compareGroups) #build descriptive statistic tables
> library(HDclassif) #contains the dataset
> library(NbClust) #cluster validity measures
> library(sparcl) #colored dendrogram

The dataset is in the HDclassif package, which we installed. So, we can load the data and examine the structure with the str() function:

> data(wine)

> str(wine)
'data.frame':178 obs. of  14 variables:
 $ class: int  1 1 1 1 1 1 1 1 1 1 ...
 $ V1   : num  14.2 13.2 13.2 14.4 13.2 ...
 $ V2   : num  1.71 1.78 2.36 1.95 2.59 1.76 1.87 2.15 1.64 1.35 
       ...
 $ V3   : num  2.43 2.14 2.67 2.5 2.87 2.45 2.45 2.61 2.17 2.27 ...
 $ V4   : num  15.6 11.2 18.6 16.8 21 15.2 14.6 17.6 14 16 ...
 $ V5   : int  127 100 101 113 118 112 96 121 97 98 ...
 $ V6   : num  2.8 2.65 2.8 3.85...
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