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Clojure for Data Science

You're reading from   Clojure for Data Science Statistics, big data, and machine learning for Clojure programmers

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Product type Paperback
Published in Sep 2015
Publisher
ISBN-13 9781784397180
Length 608 pages
Edition 1st Edition
Languages
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Author (1):
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Henry Garner Henry Garner
Author Profile Icon Henry Garner
Henry Garner
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Table of Contents (12) Chapters Close

Preface 1. Statistics FREE CHAPTER 2. Inference 3. Correlation 4. Classification 5. Big Data 6. Clustering 7. Recommender Systems 8. Network Analysis 9. Time Series 10. Visualization Index

Clustering with k-means and Incanter

Finally, having tokenized, stemmed, and vectorized our input documents—and with a selection of distance measures to choose from—we're in a position to run clustering on our data. The first clustering algorithm we'll look at is called k-means clustering.

k-means is an iterative algorithm that proceeds as follows:

  1. Randomly pick k cluster centroids.
  2. Assign each of the data points to the cluster with the closest centroid.
  3. Adjust each cluster centroid to the mean of its assigned data points.
  4. Repeat until convergence or the maximum number of iterations reached.

The process is visualized in the following diagram for k=3 clusters:

Clustering with k-means and Incanter

In the preceding figure, we can see that the initial cluster centroids at iteration 1 don't represent the structure of the data well. Although the points are clearly arranged in three groups, the initial centroids (represented by crosses) are all distributed around the top area of the graph. The points are colored...

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