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Deep Learning for Genomics

You're reading from   Deep Learning for Genomics Data-driven approaches for genomics applications in life sciences and biotechnology

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Product type Paperback
Published in Nov 2022
Publisher Packt
ISBN-13 9781804615447
Length 270 pages
Edition 1st Edition
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Author (1):
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Upendra Kumar Devisetty Upendra Kumar Devisetty
Author Profile Icon Upendra Kumar Devisetty
Upendra Kumar Devisetty
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Table of Contents (18) Chapters Close

Preface 1. Part 1 – Machine Learning in Genomics
2. Chapter 1: Introducing Machine Learning for Genomics FREE CHAPTER 3. Chapter 2: Genomics Data Analysis 4. Chapter 3: Machine Learning Methods for Genomic Applications 5. Part 2 – Deep Learning for Genomic Applications
6. Chapter 4: Deep Learning for Genomics 7. Chapter 5: Introducing Convolutional Neural Networks for Genomics 8. Chapter 6: Recurrent Neural Networks in Genomics 9. Chapter 7: Unsupervised Deep Learning with Autoencoders 10. Chapter 8: GANs for Improving Models in Genomics 11. Part 3 – Operationalizing models
12. Chapter 9: Building and Tuning Deep Learning Models 13. Chapter 10: Model Interpretability in Genomics 14. Chapter 11: Model Deployment and Monitoring 15. Chapter 12: Challenges, Pitfalls, and Best Practices for Deep Learning in Genomics 16. Index 17. Other Books You May Enjoy

Tuning the models

One common problem in model development is overfitting. Overfitting happens when the model performs well on the training data but does not generalize well on unseen data. There are several reasons for overfitting, such as high model complexity, training for many epochs, too little training data, and so on. Model tuning is the processing of increasing model performance by limiting model complexity, regularization, dropout, and so on to reduce overfitting. This is generally done in DL by optimizing “hyperparameters”.

Before we further discuss tuning models, let’s understand the difference between parameters and hyperparameters. Parameters are inputs to the ML library or model that can be generally learned from the model. Some examples of the parameters of NNs include weights and biases. During model training, through backpropagation, the model learns those parameters, whereas hyperparameters are those parameters that cannot be learned from the...

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