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Deep Learning for Genomics

You're reading from   Deep Learning for Genomics Data-driven approaches for genomics applications in life sciences and biotechnology

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Product type Paperback
Published in Nov 2022
Publisher Packt
ISBN-13 9781804615447
Length 270 pages
Edition 1st Edition
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Author (1):
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Upendra Kumar Devisetty Upendra Kumar Devisetty
Author Profile Icon Upendra Kumar Devisetty
Upendra Kumar Devisetty
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Table of Contents (18) Chapters Close

Preface 1. Part 1 – Machine Learning in Genomics
2. Chapter 1: Introducing Machine Learning for Genomics FREE CHAPTER 3. Chapter 2: Genomics Data Analysis 4. Chapter 3: Machine Learning Methods for Genomic Applications 5. Part 2 – Deep Learning for Genomic Applications
6. Chapter 4: Deep Learning for Genomics 7. Chapter 5: Introducing Convolutional Neural Networks for Genomics 8. Chapter 6: Recurrent Neural Networks in Genomics 9. Chapter 7: Unsupervised Deep Learning with Autoencoders 10. Chapter 8: GANs for Improving Models in Genomics 11. Part 3 – Operationalizing models
12. Chapter 9: Building and Tuning Deep Learning Models 13. Chapter 10: Model Interpretability in Genomics 14. Chapter 11: Model Deployment and Monitoring 15. Chapter 12: Challenges, Pitfalls, and Best Practices for Deep Learning in Genomics 16. Index 17. Other Books You May Enjoy

Summary

Understanding the key concepts of the DL life cycle—which involves several phases, right from understanding the business problem, all the way to model monitoring—is important for developing DL models for genomic applications because each of these phases is critical for the success of building a highly accurate model. Developing DL models for genomic applications not only involves conceptual understanding but also knowing how to practically apply these algorithms in genomics using the available DL libraries.

We started the chapter by going through the iterative steps of a DL life cycle which start with understanding the business problem and culminating with model monitoring. We understood how DL can help to solve a business problem with the right framing of the business problem into a DL problem. Fortunately, the DL community has come up with detailed steps that can help make this process easy.

Since training, tuning, and evaluation are the main topics of...

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