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R Bioinformatics Cookbook

You're reading from   R Bioinformatics Cookbook Utilize R packages for bioinformatics, genomics, data science, and machine learning

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Product type Paperback
Published in Oct 2023
Publisher Packt
ISBN-13 9781837634279
Length 396 pages
Edition 2nd Edition
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Author (1):
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Dan MacLean Dan MacLean
Author Profile Icon Dan MacLean
Dan MacLean
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Toc

Table of Contents (16) Chapters Close

Preface 1. Chapter 1: Setting Up Your R Bioinformatics Working Environment 2. Chapter 2: Loading, Tidying, and Cleaning Data in the tidyverse FREE CHAPTER 3. Chapter 3: ggplot2 and Extensions for Publication Quality Plots 4. Chapter 4: Using Quarto to Make Data-Rich Reports, Presentations, and Websites 5. Chapter 5: Easily Performing Statistical Tests Using Linear Models 6. Chapter 6: Performing Quantitative RNA-seq 7. Chapter 7: Finding Genetic Variants with HTS Data 8. Chapter 8: Searching Gene and Protein Sequences for Domains and Motifs 9. Chapter 9: Phylogenetic Analysis and Visualization 10. Chapter 10: Analyzing Gene Annotations 11. Chapter 11: Machine Learning with mlr3 12. Chapter 12: Functional Programming with purrr and base R 13. Chapter 13: Turbo-Charging Development in R with ChatGPT 14. Index 15. Other Books You May Enjoy

Defining a task and learner to implement k-nearest neighbors (k-NNs) in mlr3

The k-nearest neighbors (k-NN) classification is a non-parametric ML algorithm used for classifying data points based on their proximity to other labeled data points. The algorithm determines the class membership of an unlabeled data point by examining the classes of its k-NNs in the feature space. The dataset consists of labeled data points, where each data point has a set of features (attributes) and belongs to a specific class or category. The value of k represents the number of nearest neighbors to consider for classification. It is typically chosen based on cross-validation or other model selection techniques. The algorithm measures the distance between the unlabeled data point and all the labeled data points in the feature space. The most commonly used distance metric is Euclidean distance. The k data points with the shortest distances to the unlabeled point are identified as its nearest neighbors. The...

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