Index

As this ebook edition doesn't have fixed pagination, the page numbers below are hyperlinked for reference only, based on the printed edition of this book.

Symbols

3D structure protein alignment

predicting, in bio3d 231-233

A

AllelicImbalance

used, for finding allele-specific expression (ASE) 166-169

analysis of variance (ANOVA) 97

using, to compare multiple groups in multiple variable 111-114

using, to compare multiple groups in single variable 108-110

AnnoDB packages

using, for genome annotation 272-274

ape package 238

tree formats, reading and writing 239, 240

used, for extracting and working with subtrees 249-251

apply() functions

using 327-329

arbitrary functions

applying, using mutate() function 36-38

autoplot() function 294

B

base R objects

making tidy 322, 323

basic helix-loop-helix (bHLH) 252

batch effects

estimating, with SVA 164-166

bio3d

3D structure protein alignment...