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Mastering Machine Learning with R

You're reading from   Mastering Machine Learning with R Master machine learning techniques with R to deliver insights for complex projects

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Product type Paperback
Published in Oct 2015
Publisher
ISBN-13 9781783984527
Length 400 pages
Edition 1st Edition
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Author (1):
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Cory Lesmeister Cory Lesmeister
Author Profile Icon Cory Lesmeister
Cory Lesmeister
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Table of Contents (15) Chapters Close

Preface 1. A Process for Success 2. Linear Regression – The Blocking and Tackling of Machine Learning FREE CHAPTER 3. Logistic Regression and Discriminant Analysis 4. Advanced Feature Selection in Linear Models 5. More Classification Techniques – K-Nearest Neighbors and Support Vector Machines 6. Classification and Regression Trees 7. Neural Networks 8. Cluster Analysis 9. Principal Components Analysis 10. Market Basket Analysis and Recommendation Engines 11. Time Series and Causality 12. Text Mining A. R Fundamentals Index

Modeling and evaluation

For the modeling process, we will follow the following steps:

  1. Extract the components and determine the number to retain
  2. Rotate the retained components
  3. Interpret the rotated solution
  4. Create the factor scores
  5. Use the scores as input variables for regression analysis

There are many different ways and packages to conduct PCA in R, including what seems to be the most commonly used prcomp() and princomp() functions in base R. However, for my money, it seems that the psych package is the most flexible with the best options. For rotation with this package, you will also need to load GPArotation.

Component extraction

To extract the components with the psych package, you will use the principal() function. The syntax will include the data (pca.df) and number of the components to extract. We will try 5, and we will state that we do not want to rotate the components at this time. You can choose not to specify nfactors, but the output would be rather lengthy as it would produce k-1 components...

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