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Bayesian Analysis with Python

You're reading from   Bayesian Analysis with Python Introduction to statistical modeling and probabilistic programming using PyMC3 and ArviZ

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Product type Paperback
Published in Dec 2018
Publisher Packt
ISBN-13 9781789341652
Length 356 pages
Edition 2nd Edition
Languages
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Author (1):
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Osvaldo Martin Osvaldo Martin
Author Profile Icon Osvaldo Martin
Osvaldo Martin
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Table of Contents (11) Chapters Close

Preface 1. Thinking Probabilistically 2. Programming Probabilistically FREE CHAPTER 3. Modeling with Linear Regression 4. Generalizing Linear Models 5. Model Comparison 6. Mixture Models 7. Gaussian Processes 8. Inference Engines 9. Where To Go Next?
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WAIC in depth

If we expand equation 5.6, we get the following:

Both terms in this expression look very similar. The first one, the lppd (log point-wise predictive density), is computing the mean likelihood over the posterior samples. We do this for each data point and then we take the logarithm and sum up over all data points. Please compare this term with equations 5.3 and 5.4. This is just what we call deviance, but computed, taking into account the posterior. Thus, if we accept that computing the log-likelihood is a good way to measure the appropriateness of the fit of a model, then computing it from the posterior is a logic path for a Bayesian approach. As we already said, the lddp of observed data is an overestimate of the lppd for future data. Thus, we introduce a second term to correct the overestimation. The second term computes the variance of the log-likelihood over...

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