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Bayesian Analysis with Python

You're reading from   Bayesian Analysis with Python A practical guide to probabilistic modeling

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Product type Paperback
Published in Jan 2024
Publisher Packt
ISBN-13 9781805127161
Length 394 pages
Edition 3rd Edition
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Author (1):
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Osvaldo Martin Osvaldo Martin
Author Profile Icon Osvaldo Martin
Osvaldo Martin
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Table of Contents (15) Chapters Close

Preface
1. Chapter 1 Thinking Probabilistically FREE CHAPTER 2. Chapter 2 Programming Probabilistically 3. Chapter 3 Hierarchical Models 4. Chapter 4 Modeling with Lines 5. Chapter 5 Comparing Models 6. Chapter 6 Modeling with Bambi 7. Chapter 7 Mixture Models 8. Chapter 8 Gaussian Processes 9. Chapter 9 Bayesian Additive Regression Trees 10. Chapter 10 Inference Engines 11. Chapter 11 Where to Go Next 12. Bibliography
13. Other Books You May Enjoy
14. Index

10.7 Convergence

Theoretically, MCMC methods are guaranteed to converge once we take infinite samples. In practice, we need to check that we have reasonable finite samples. Usually, we say the sampler has converged once we have collected evidence showing that samples are stable in some sense. A simple test to do is to run the same MCMC simulation multiple times and check whether we get the same result every time. This is the reason why PyMC runs more by default than on chain. For modern computers, this is virtually free as we have multiple cores. Also, they do not create any waste, as we can combine samples from different chains to compute summaries, plots, etc.

There are many ways to check that different chains are practically equivalent, both visually and with formal tests. We are not going to get too technical here; we are just going to show a few examples and hope they are enough for you to develop an intuition for interpreting diagnostics.

10.7.1 Trace plot

One way to check...

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