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IPython Interactive Computing and Visualization Cookbook

You're reading from   IPython Interactive Computing and Visualization Cookbook Over 100 hands-on recipes to sharpen your skills in high-performance numerical computing and data science in the Jupyter Notebook

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Product type Paperback
Published in Jan 2018
Publisher Packt
ISBN-13 9781785888632
Length 548 pages
Edition 2nd Edition
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Author (1):
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Cyrille Rossant Cyrille Rossant
Author Profile Icon Cyrille Rossant
Cyrille Rossant
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Table of Contents (17) Chapters Close

Preface 1. A Tour of Interactive Computing with Jupyter and IPython FREE CHAPTER 2. Best Practices in Interactive Computing 3. Mastering the Jupyter Notebook 4. Profiling and Optimization 5. High-Performance Computing 6. Data Visualization 7. Statistical Data Analysis 8. Machine Learning 9. Numerical Optimization 10. Signal Processing 11. Image and Audio Processing 12. Deterministic Dynamical Systems 13. Stochastic Dynamical Systems 14. Graphs, Geometry, and Geographic Information Systems 15. Symbolic and Numerical Mathematics Index

Fitting a probability distribution to data with the maximum likelihood method


A good way to explain a dataset is to apply a probabilistic model to it. Finding an adequate model can be a job on its own. Once a model is chosen, it is necessary to compare it to the data. This is what statistical estimation is about. In this recipe, we apply the maximum likelihood method on a dataset of survival times after heart transplant (1967-1974 study).

Getting ready

As usual in this chapter, a background in probability theory and real analysis is recommended. In addition, you need the statsmodels package to retrieve the test dataset. It should be included in Anaconda, but you can always install it with the conda install statsmodels command.

How to do it...

  1. statsmodels is a Python package for conducting statistical data analyses. It also contains real-world datasets that we can use when experimenting with new methods. Here, we load the heart dataset:

    >>> import numpy as np
        import scipy.stats as...
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