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IPython Interactive Computing and Visualization Cookbook

You're reading from   IPython Interactive Computing and Visualization Cookbook Harness IPython for powerful scientific computing and Python data visualization with this collection of more than 100 practical data science recipes

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Product type Paperback
Published in Sep 2014
Publisher
ISBN-13 9781783284818
Length 512 pages
Edition 1st Edition
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Author (1):
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Cyrille Rossant Cyrille Rossant
Author Profile Icon Cyrille Rossant
Cyrille Rossant
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Toc

Table of Contents (17) Chapters Close

Preface 1. A Tour of Interactive Computing with IPython FREE CHAPTER 2. Best Practices in Interactive Computing 3. Mastering the Notebook 4. Profiling and Optimization 5. High-performance Computing 6. Advanced Visualization 7. Statistical Data Analysis 8. Machine Learning 9. Numerical Optimization 10. Signal Processing 11. Image and Audio Processing 12. Deterministic Dynamical Systems 13. Stochastic Dynamical Systems 14. Graphs, Geometry, and Geographic Information Systems 15. Symbolic and Numerical Mathematics Index

Segmenting an image


Image segmentation consists of partitioning an image into different regions that share certain characteristics. This is a fundamental task in computer vision, facial recognition, and medical imaging. For example, an image segmentation algorithm can automatically detect the contours of an organ in a medical image.

scikit-image provides several segmentation methods. In this recipe, we will demonstrate how to segment an image containing different objects.

How to do it...

  1. Let's import the packages:

    In [1]: import numpy as np
            import matplotlib.pyplot as plt
            from skimage.data import coins
            from skimage.filter import threshold_otsu
            from skimage.segmentation import clear_border
            from skimage.morphology import closing, square
            from skimage.measure import regionprops, label
            from skimage.color import lab2rgb
            %matplotlib inline
  2. We create a function that displays a grayscale image:

    In [2]: def show(img, cmap=None):
              ...
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