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Deep Learning for Genomics

You're reading from   Deep Learning for Genomics Data-driven approaches for genomics applications in life sciences and biotechnology

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Product type Paperback
Published in Nov 2022
Publisher Packt
ISBN-13 9781804615447
Length 270 pages
Edition 1st Edition
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Author (1):
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Upendra Kumar Devisetty Upendra Kumar Devisetty
Author Profile Icon Upendra Kumar Devisetty
Upendra Kumar Devisetty
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Table of Contents (18) Chapters Close

Preface 1. Part 1 – Machine Learning in Genomics
2. Chapter 1: Introducing Machine Learning for Genomics FREE CHAPTER 3. Chapter 2: Genomics Data Analysis 4. Chapter 3: Machine Learning Methods for Genomic Applications 5. Part 2 – Deep Learning for Genomic Applications
6. Chapter 4: Deep Learning for Genomics 7. Chapter 5: Introducing Convolutional Neural Networks for Genomics 8. Chapter 6: Recurrent Neural Networks in Genomics 9. Chapter 7: Unsupervised Deep Learning with Autoencoders 10. Chapter 8: GANs for Improving Models in Genomics 11. Part 3 – Operationalizing models
12. Chapter 9: Building and Tuning Deep Learning Models 13. Chapter 10: Model Interpretability in Genomics 14. Chapter 11: Model Deployment and Monitoring 15. Chapter 12: Challenges, Pitfalls, and Best Practices for Deep Learning in Genomics 16. Index 17. Other Books You May Enjoy

Introduction to Biopython for genomic data analysis

In this section, you will be familiarized with the basics of Biopython, and in the subsequent section, you will use Biopython for solving a real-world research question in genomics.

What is Biopython?

Biopython is a popular Python package developed by Chapman and Chang, mainly intended for biological researchers and data miners to analyze genomic data. It was written mainly in Python but also has support for C code to optimize complex computations. It can be run on any operating system (Windows, Linux, and macOS). Biopython provides lots of functionalities to support genomic data and it makes it easy to use Python for genomic data analysis through reusable modules and classes. In addition to providing basic and advanced genomic functionalities, it also has support for parsers for various popular bioinformatics file formats such as BLAST, ClustalW, FASTA, and GenBank, as well as support online databases and servers such as NCBI...

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