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R Bioinformatics Cookbook

You're reading from   R Bioinformatics Cookbook Utilize R packages for bioinformatics, genomics, data science, and machine learning

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Product type Paperback
Published in Oct 2023
Publisher Packt
ISBN-13 9781837634279
Length 396 pages
Edition 2nd Edition
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Author (1):
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Dan MacLean Dan MacLean
Author Profile Icon Dan MacLean
Dan MacLean
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Table of Contents (16) Chapters Close

Preface 1. Chapter 1: Setting Up Your R Bioinformatics Working Environment 2. Chapter 2: Loading, Tidying, and Cleaning Data in the tidyverse FREE CHAPTER 3. Chapter 3: ggplot2 and Extensions for Publication Quality Plots 4. Chapter 4: Using Quarto to Make Data-Rich Reports, Presentations, and Websites 5. Chapter 5: Easily Performing Statistical Tests Using Linear Models 6. Chapter 6: Performing Quantitative RNA-seq 7. Chapter 7: Finding Genetic Variants with HTS Data 8. Chapter 8: Searching Gene and Protein Sequences for Domains and Motifs 9. Chapter 9: Phylogenetic Analysis and Visualization 10. Chapter 10: Analyzing Gene Annotations 11. Chapter 11: Machine Learning with mlr3 12. Chapter 12: Functional Programming with purrr and base R 13. Chapter 13: Turbo-Charging Development in R with ChatGPT 14. Index 15. Other Books You May Enjoy

Using nested dataframes for functional programming

Functional programming is a programming style that focuses on using functions to solve problems. It avoids changing data and emphasizes writing clear, reusable code that is easier to understand and predictable in its behavior.

The dataframe is at the core of the tidy way of working, and we tend to think of it as a spreadsheet-like rectangular data container, with only a single value in each cell. In fact, dataframes can be nested – they can hold other dataframes in specific single cells. This is achieved internally by replacing a dataframe’s vector column with a list column so that each cell becomes a member of a list, and any sort of object can be held within the now conceptual single cell of the outer dataframe.

In this recipe, we’ll look at ways to make a nested dataframe and ways of working with it using a functional style, with the aim that it will simplify working with large or multifaceted data.

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