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Deep Learning for Genomics

You're reading from   Deep Learning for Genomics Data-driven approaches for genomics applications in life sciences and biotechnology

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Product type Paperback
Published in Nov 2022
Publisher Packt
ISBN-13 9781804615447
Length 270 pages
Edition 1st Edition
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Author (1):
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Upendra Kumar Devisetty Upendra Kumar Devisetty
Author Profile Icon Upendra Kumar Devisetty
Upendra Kumar Devisetty
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Toc

Table of Contents (18) Chapters Close

Preface 1. Part 1 – Machine Learning in Genomics
2. Chapter 1: Introducing Machine Learning for Genomics FREE CHAPTER 3. Chapter 2: Genomics Data Analysis 4. Chapter 3: Machine Learning Methods for Genomic Applications 5. Part 2 – Deep Learning for Genomic Applications
6. Chapter 4: Deep Learning for Genomics 7. Chapter 5: Introducing Convolutional Neural Networks for Genomics 8. Chapter 6: Recurrent Neural Networks in Genomics 9. Chapter 7: Unsupervised Deep Learning with Autoencoders 10. Chapter 8: GANs for Improving Models in Genomics 11. Part 3 – Operationalizing models
12. Chapter 9: Building and Tuning Deep Learning Models 13. Chapter 10: Model Interpretability in Genomics 14. Chapter 11: Model Deployment and Monitoring 15. Chapter 12: Challenges, Pitfalls, and Best Practices for Deep Learning in Genomics 16. Index 17. Other Books You May Enjoy

Summary

RNNs are a special type of neural network that is well suited for sequential data such as time series, audio, video, and text. Research showed that RNNs have improved the performance of sequential data types when compared to other architectures such as FNNs and CNNs. The key to an RNN is the sequence memory state, which helps it store information from the previously analyzed state; this is good for sequential signal analysis and predictive analysis. In this chapter, we learned how RNNs are different from FNNs and CNNs. We understood the different types of RNNs and what makes them good for sequential data analysis by looking at a few examples. RNNs, as you may have noticed, are good for mapping a fixed or variable-sized input sequence to a fixed or variable-sized output; we have seen several examples to understand this.

We also looked at how RNNs can help with genomics tasks and understood the different architectural types of RNNs. Bidirectional RNN, LSTM, and GRU are variants...

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