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R Bioinformatics Cookbook

You're reading from   R Bioinformatics Cookbook Utilize R packages for bioinformatics, genomics, data science, and machine learning

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Product type Paperback
Published in Oct 2023
Publisher Packt
ISBN-13 9781837634279
Length 396 pages
Edition 2nd Edition
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Author (1):
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Dan MacLean Dan MacLean
Author Profile Icon Dan MacLean
Dan MacLean
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Toc

Table of Contents (16) Chapters Close

Preface 1. Chapter 1: Setting Up Your R Bioinformatics Working Environment 2. Chapter 2: Loading, Tidying, and Cleaning Data in the tidyverse FREE CHAPTER 3. Chapter 3: ggplot2 and Extensions for Publication Quality Plots 4. Chapter 4: Using Quarto to Make Data-Rich Reports, Presentations, and Websites 5. Chapter 5: Easily Performing Statistical Tests Using Linear Models 6. Chapter 6: Performing Quantitative RNA-seq 7. Chapter 7: Finding Genetic Variants with HTS Data 8. Chapter 8: Searching Gene and Protein Sequences for Domains and Motifs 9. Chapter 9: Phylogenetic Analysis and Visualization 10. Chapter 10: Analyzing Gene Annotations 11. Chapter 11: Machine Learning with mlr3 12. Chapter 12: Functional Programming with purrr and base R 13. Chapter 13: Turbo-Charging Development in R with ChatGPT 14. Index 15. Other Books You May Enjoy

Modeling data with a linear model

Linear models are a type of statistical model used to analyze the relationship between a dependent variable and one or more independent variables. In essence, they seek to fit a line that best describes the relationship between these variables, allowing us to make predictions about the dependent variable based on the values of the independent variables. The equation for a simple linear model can be written as follows:

y = β 0 + β 1 x + ε

where y is the dependent variable, x is the independent variable, β 0 and β 1 are coefficients that represent the intercept and slope of the line, respectively, and ε is the error term.

The output of a linear model typically includes the coefficients of the model, which describe the strength and direction of the relationship between the variables, as well as measures of the model’s goodness of fit, such as the R-squared value.

Linear models...

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