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Data Analysis with R, Second Edition - Second Edition

You're reading from  Data Analysis with R, Second Edition - Second Edition

Product type Book
Published in Mar 2018
Publisher Packt
ISBN-13 9781788393720
Pages 570 pages
Edition 2nd Edition
Languages
Toc

Table of Contents (24) Chapters close

Title Page
Copyright and Credits
Packt Upsell
Contributors
Preface
1. RefresheR 2. The Shape of Data 3. Describing Relationships 4. Probability 5. Using Data To Reason About The World 6. Testing Hypotheses 7. Bayesian Methods 8. The Bootstrap 9. Predicting Continuous Variables 10. Predicting Categorical Variables 11. Predicting Changes with Time 12. Sources of Data 13. Dealing with Missing Data 14. Dealing with Messy Data 15. Dealing with Large Data 16. Working with Popular R Packages 17. Reproducibility and Best Practices 1. Other Books You May Enjoy Index

Fitting distributions the Bayesian way


In this next example, we are going to be fitting a normal distribution to the precipitation dataset that we worked with in the previous chapter. We will wrap up with Bayesian analogue to the one sample t-test.

The results we want from this analysis are credible values of the true population mean of the precipitation data. Refer back to the previous chapter to recall that the sample mean was 34.89. In addition, we will also be determining credible values of the standard deviation of the precipitation data. Since we are interested in the credible values of two parameters, our posterior distribution is a joint distribution.

Our model will look a little differently now:

the.model <- " 
model { 
  mu ~ dunif(0, 60)        # prior 
  stddev ~ dunif(0, 30)    # prior 
  tau <- pow(stddev, -2)   
 
  for(i in 1:theLength){ 
    samp[i] ~ dnorm(mu, tau)   # likelihood function 
  } 
}" 

This time, we have to set two priors, one for the mean of the Gaussian...

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