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R Bioinformatics Cookbook

You're reading from   R Bioinformatics Cookbook Use R and Bioconductor to perform RNAseq, genomics, data visualization, and bioinformatic analysis

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Product type Paperback
Published in Oct 2019
Publisher Packt
ISBN-13 9781789950694
Length 316 pages
Edition 1st Edition
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Authors (2):
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Dr Dan Maclean Dr Dan Maclean
Author Profile Icon Dr Dan Maclean
Dr Dan Maclean
Dan MacLean Dan MacLean
Author Profile Icon Dan MacLean
Dan MacLean
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Toc

Table of Contents (13) Chapters Close

Preface 1. Performing Quantitative RNAseq 2. Finding Genetic Variants with HTS Data FREE CHAPTER 3. Searching Genes and Proteins for Domains and Motifs 4. Phylogenetic Analysis and Visualization 5. Metagenomics 6. Proteomics from Spectrum to Annotation 7. Producing Publication and Web-Ready Visualizations 8. Working with Databases and Remote Data Sources 9. Useful Statistical and Machine Learning Methods 10. Programming with Tidyverse and Bioconductor 11. Building Objects and Packages for Code Reuse 12. Other Books You May Enjoy

Using continuous integration with Travis to keep code tested and up to date

Continuous Integration (CI) is a team programming practice that was developed to help large teams working on the same project to keep all of their code, dependencies, and tests working together as well as possible. The tools developed to facilitate this can also help us to manage our own software projects and keep on top of problems that arise from our own updates, updates in the packages we have used as dependencies, and even updates to R and the operating system in certain cases. Travis.CI is one CI service that is supported in the devtools package. With Travis.CI integrated into your project, the Travis server will build a new virtual computer, install an operating system on it, install R and all of the package dependencies your package needs, then install your package and run its test suite. Travis...

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