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Deep Learning for Genomics

You're reading from   Deep Learning for Genomics Data-driven approaches for genomics applications in life sciences and biotechnology

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Product type Paperback
Published in Nov 2022
Publisher Packt
ISBN-13 9781804615447
Length 270 pages
Edition 1st Edition
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Author (1):
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Upendra Kumar Devisetty Upendra Kumar Devisetty
Author Profile Icon Upendra Kumar Devisetty
Upendra Kumar Devisetty
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Table of Contents (18) Chapters Close

Preface 1. Part 1 – Machine Learning in Genomics
2. Chapter 1: Introducing Machine Learning for Genomics FREE CHAPTER 3. Chapter 2: Genomics Data Analysis 4. Chapter 3: Machine Learning Methods for Genomic Applications 5. Part 2 – Deep Learning for Genomic Applications
6. Chapter 4: Deep Learning for Genomics 7. Chapter 5: Introducing Convolutional Neural Networks for Genomics 8. Chapter 6: Recurrent Neural Networks in Genomics 9. Chapter 7: Unsupervised Deep Learning with Autoencoders 10. Chapter 8: GANs for Improving Models in Genomics 11. Part 3 – Operationalizing models
12. Chapter 9: Building and Tuning Deep Learning Models 13. Chapter 10: Model Interpretability in Genomics 14. Chapter 11: Model Deployment and Monitoring 15. Chapter 12: Challenges, Pitfalls, and Best Practices for Deep Learning in Genomics 16. Index 17. Other Books You May Enjoy

DNNs for genomics

The field of genomics has benefitted primarily due to the technological advancements in NGS, which can generate genomics data at a low cost and scale. This opened opportunities for many areas of science, such as bioinformatics and ML. Bioinformatics, the field of computational algorithms used to process biological data, was hugely successful in genomics, enabling rules to mine insights from the data. ML methodologies have a huge influence on genomics for solving some complex biological problems such as gene signatures, functional genomics, gene interactions, and so on. However, the current advances in genomics technologies, coupled with ever-growing genomics data, have created lots of new challenges that require highly accurate and sophisticated algorithms.

DL, a component of ML, has made significant strides in the areas of speech recognition, computer vision, machine translation, NLP, and so on. Because of DL’s ability to solve complex tasks with high accuracy...

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