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Mastering Predictive Analytics with R, Second Edition

You're reading from   Mastering Predictive Analytics with R, Second Edition Machine learning techniques for advanced models

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Product type Paperback
Published in Aug 2017
Publisher Packt
ISBN-13 9781787121393
Length 448 pages
Edition 2nd Edition
Languages
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Authors (2):
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James D. Miller James D. Miller
Author Profile Icon James D. Miller
James D. Miller
Rui Miguel Forte Rui Miguel Forte
Author Profile Icon Rui Miguel Forte
Rui Miguel Forte
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Table of Contents (16) Chapters Close

Preface 1. Gearing Up for Predictive Modeling FREE CHAPTER 2. Tidying Data and Measuring Performance 3. Linear Regression 4. Generalized Linear Models 5. Neural Networks 6. Support Vector Machines 7. Tree-Based Methods 8. Dimensionality Reduction 9. Ensemble Methods 10. Probabilistic Graphical Models 11. Topic Modeling 12. Recommendation Systems 13. Scaling Up 14. Deep Learning Index

Predicting chemical biodegration


In this section, we are going to use R's e1071 package to try out the models we've discussed on a real-world dataset. As our first example, we have chosen the QSARbiodegration data set, which can be found at https://archive.ics.uci.edu/ml/datasets/QSAR+biodegradation. This is a dataset containing 41 numerical variables that describe the molecular composition and properties of 1,055 chemicals. The modeling task is to predict whether a particular chemical will be biodegradable based on these properties. Example properties are the percentages of carbon, nitrogen, and oxygen atoms, as well as the number of heavy atoms in the molecule. These features are highly specialized and sufficiently numerous, so a full listing won't be given here. The complete list and further details of the quantities involved can be found on the website. For now, we've downloaded the data into a bdf data frame:

>bdf<- read.table("biodeg.csv", sep = ";", quote = "\"")
> head(bdf...
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