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R Bioinformatics Cookbook

You're reading from   R Bioinformatics Cookbook Use R and Bioconductor to perform RNAseq, genomics, data visualization, and bioinformatic analysis

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Product type Paperback
Published in Oct 2019
Publisher Packt
ISBN-13 9781789950694
Length 316 pages
Edition 1st Edition
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Authors (2):
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Dr Dan Maclean Dr Dan Maclean
Author Profile Icon Dr Dan Maclean
Dr Dan Maclean
Dan MacLean Dan MacLean
Author Profile Icon Dan MacLean
Dan MacLean
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Toc

Table of Contents (13) Chapters Close

Preface 1. Performing Quantitative RNAseq FREE CHAPTER 2. Finding Genetic Variants with HTS Data 3. Searching Genes and Proteins for Domains and Motifs 4. Phylogenetic Analysis and Visualization 5. Metagenomics 6. Proteomics from Spectrum to Annotation 7. Producing Publication and Web-Ready Visualizations 8. Working with Databases and Remote Data Sources 9. Useful Statistical and Machine Learning Methods 10. Programming with Tidyverse and Bioconductor 11. Building Objects and Packages for Code Reuse 12. Other Books You May Enjoy

Using nested dataframes

The dataframe is at the core of the tidy way of working and we tend to think of it as a spreadsheet-like rectangular data container with only a single value in each cell. In fact, dataframes can be nested—that is, they can hold other dataframes in specific, single cells. This is achieved internally by replacing a dataframe's vector column with a list column. Each cell is instead a member of a list, so any sort of object can be held within the conceptual single cell of the outer dataframe. In this recipe, we'll look at ways of making a nested dataframe and different ways of working with it.

Getting ready

We'll need the tidyr, dplyr, purrr, and magrittr libraries. We'll also...

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