Search icon CANCEL
Subscription
0
Cart icon
Your Cart (0 item)
Close icon
You have no products in your basket yet
Arrow left icon
Explore Products
Best Sellers
New Releases
Books
Videos
Audiobooks
Learning Hub
Free Learning
Arrow right icon
Arrow up icon
GO TO TOP
R Bioinformatics Cookbook

You're reading from   R Bioinformatics Cookbook Use R and Bioconductor to perform RNAseq, genomics, data visualization, and bioinformatic analysis

Arrow left icon
Product type Paperback
Published in Oct 2019
Publisher Packt
ISBN-13 9781789950694
Length 316 pages
Edition 1st Edition
Languages
Tools
Arrow right icon
Authors (2):
Arrow left icon
Dr Dan Maclean Dr Dan Maclean
Author Profile Icon Dr Dan Maclean
Dr Dan Maclean
Dan MacLean Dan MacLean
Author Profile Icon Dan MacLean
Dan MacLean
Arrow right icon
View More author details
Toc

Table of Contents (13) Chapters Close

Preface 1. Performing Quantitative RNAseq FREE CHAPTER 2. Finding Genetic Variants with HTS Data 3. Searching Genes and Proteins for Domains and Motifs 4. Phylogenetic Analysis and Visualization 5. Metagenomics 6. Proteomics from Spectrum to Annotation 7. Producing Publication and Web-Ready Visualizations 8. Working with Databases and Remote Data Sources 9. Useful Statistical and Machine Learning Methods 10. Programming with Tidyverse and Bioconductor 11. Building Objects and Packages for Code Reuse 12. Other Books You May Enjoy

Simple ways to package code for sharing and reuse

Inevitably, there will come a time when you want to be able to reuse some functions or classes and not have to type (or—horror—copy and paste) them in every time. Having just one reliable version of things in one place makes it easy to manage and keep on top of mistakes and changes in code. So, in this recipe, we'll look at two simple ways of wrapping code up to reuse it. We'll touch on the very basics of package creation, though the packages we will make will be quite bare-bones and will need quite some fleshing outespecially with documentation and tests—before you consider releasing them. The packages you make in this way, though, will help you out as you develop your code.

Getting ready

...
lock icon The rest of the chapter is locked
Register for a free Packt account to unlock a world of extra content!
A free Packt account unlocks extra newsletters, articles, discounted offers, and much more. Start advancing your knowledge today.
Unlock this book and the full library FREE for 7 days
Get unlimited access to 7000+ expert-authored eBooks and videos courses covering every tech area you can think of
Renews at $19.99/month. Cancel anytime
Banner background image