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IPython Interactive Computing and Visualization Cookbook

You're reading from   IPython Interactive Computing and Visualization Cookbook Over 100 hands-on recipes to sharpen your skills in high-performance numerical computing and data science in the Jupyter Notebook

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Product type Paperback
Published in Jan 2018
Publisher Packt
ISBN-13 9781785888632
Length 548 pages
Edition 2nd Edition
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Author (1):
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Cyrille Rossant Cyrille Rossant
Author Profile Icon Cyrille Rossant
Cyrille Rossant
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Table of Contents (17) Chapters Close

Preface 1. A Tour of Interactive Computing with Jupyter and IPython FREE CHAPTER 2. Best Practices in Interactive Computing 3. Mastering the Jupyter Notebook 4. Profiling and Optimization 5. High-Performance Computing 6. Data Visualization 7. Statistical Data Analysis 8. Machine Learning 9. Numerical Optimization 10. Signal Processing 11. Image and Audio Processing 12. Deterministic Dynamical Systems 13. Stochastic Dynamical Systems 14. Graphs, Geometry, and Geographic Information Systems 15. Symbolic and Numerical Mathematics Index

Profiling your code line-by-line with line_profiler


Python's native cProfile module and the corresponding %prun magic break down the execution time of code function by function. Sometimes, we may need an even more fine-grained analysis of code performance with a line-by-line report. Such reports can be easier to read than reports from cProfile.

To profile code line-by-line, we need an external Python module named line_profiler. In this recipe, we will demonstrate how to use this module within IPython.

Getting ready

To install line_profiler, type conda install line_profiler in a Terminal.

How do to it...

We will profile the same simulation code as in the previous recipe, line-by-line.

  1. First, let's import NumPy and the line_profiler IPython extension module that comes with the package:

    >>> import numpy as np
        %load_ext line_profiler
  2. This IPython extension module provides an %lprun magic command to profile a Python function line-by-line. It works best when the function is defined in a file...

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