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Data Analysis with R, Second Edition

You're reading from   Data Analysis with R, Second Edition A comprehensive guide to manipulating, analyzing, and visualizing data in R

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Product type Paperback
Published in Mar 2018
Publisher Packt
ISBN-13 9781788393720
Length 570 pages
Edition 2nd Edition
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Author (1):
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Tony Fischetti Tony Fischetti
Author Profile Icon Tony Fischetti
Tony Fischetti
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Table of Contents (19) Chapters Close

Preface 1. RefresheR FREE CHAPTER 2. The Shape of Data 3. Describing Relationships 4. Probability 5. Using Data To Reason About The World 6. Testing Hypotheses 7. Bayesian Methods 8. The Bootstrap 9. Predicting Continuous Variables 10. Predicting Categorical Variables 11. Predicting Changes with Time 12. Sources of Data 13. Dealing with Missing Data 14. Dealing with Messy Data 15. Dealing with Large Data 16. Working with Popular R Packages 17. Reproducibility and Best Practices 18. Other Books You May Enjoy

Enter MCMC – stage left


As mentioned earlier, we started with the coin flip examples because of the ease of determining the posterior distribution analytically-primarily because of the beta distribution's self-conjugacy with respect to the binomial likelihood function.

It turns out that most real-world Bayesian analyses require a more complicated solution. In particular, the hyper-parameters that define the posterior distribution are rarely known. What can be determined is the probability density in the posterior distribution for each parameter value. The easiest way to get a sense of the shape of the posterior is to sample from it many thousands of times. More specifically, we sample from all possible parameter values and record the probability density at that point.

How do we do this? Well, in the case of just one parameter value, it's often computationally tractable to just randomly sample willy-nilly from the space of all possible parameter values. For cases where we are using Bayesian...

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